EggLib

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The Align and Container classes

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Manual¶

These pages provide a detailed introduction to EggLib’s main functions with the help of a few brief examples. For a more detailed presentation of the usage of classes and methods, please refer to the Reference manual.

  • The Align and Container classes
    • Importing sequences in the fasta format
    • Exporting data
    • Iteration
    • Accessing and editing data
    • Alphabets
    • Protein translation
  • Computing diversity statistics
    • The stats.ComputeStats class
    • Computing statistics
    • Structure and group labels
    • Missing data
    • Linkage disequilibrium statistics
    • Using VCF files
  • Coalescent simulations
    • Coalescent parameters
    • Use of historical events
    • Performing simulations
  • Integration of external software
    • Principle
    • Usage

Navigation

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  • Manual