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Importing sequences in the fasta format

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The Align and Container classesΒΆ

  • Importing sequences in the fasta format
    • Simplest case
    • Alignments and containers
  • Exporting data
    • Exporting as fasta
    • Other formats
  • Iteration
    • Principle of proxy types
    • Example
  • Accessing and editing data
    • Accessing a given sample
    • Editing names
    • Editing sequences or data entries
    • Editing labels
    • Initializing instances
    • Add/remove samples
    • Editing alignments
  • Alphabets
    • Facilities available in Align/Container instances
  • Protein translation
    • The tools.translate() function
    • The tools.Translator class
    • Detecting open reading frames and processing stop codons

Navigation

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  • next |
  • previous |
  • EggLib's documentation »
  • Contents »
  • Manual »
  • The Align and Container classes