Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 1234]

CABC	Model estimation by Approximate Bayesian Computation
CArg	Ancestral recombination graph
▼CBaseDiversity	Base class of diversity classes
CHaplotypeDiversity	Computes diversity based on haplotype analysis
CLinkageDisequilibrium	Analyzes linkage disequilibrium per pair of polymorphic sites
CNucleotideDiversity	Performs analyzes of population genetics
CBppDiversity	Computes diversity statistics using third-party library Bio++
▼CChange	Pure virtual base class for parameter changes
CPopulationFusion	Fusion of two populations
CPopulationSplit	Split of a population
▼CSingleParamChange	Pure virtual base class for single parameter changes
CAllMigrationRateChange	Change of the migration rate of all population pairs
CAllPopulationSizeChange	Change of the size of all populations
CBottleneck	Bottleneck event
CGrowthRateChange	Change of the growth rate of all populations
▼CPopulationParamChange	Single parameter changes applied to a single population
CPopulationBottleneck	Population-specific bottleneck event
CPopulationGrowthRateChange	Change of a single population's growth rate
CSinglePopulationSizeChange	Change of a single population size
CSelfingRateChange	Change of the selfing rate
CSingleMigrationRateChange	Change of a single migration rate
CConsensus::PairwiseConsensus::CharacterContainer
▼CCharMatrix	Interface for classes usable as a square matrix of characters
CAlign	Handles a sequence alignment
CDataMatrix	Data table
CConsensus	Generates consensus sequences
▼CContainer	Handles a set of sequence alignment (aligned or not)
CAlign	Handles a sequence alignment
CController	Controls a coalescent simulation
CConvert	Performs conversion between sequence holder types
CCurrent	Represents the current set of populations
CEdge	Edge of the ancestral recombination graph
CEdgePool	Pool of Edge objects
▼Cexception
▼CEggException	Base exception type for errors occurring in this library
CEggArgumentValueError	Exception type for argument value errors
CEggFormatError	Exception type for file/string formatting errors
CEggInvalidCharacterError	Exception type for invalid character
CEggMemoryError	Exception type for memory errors
CEggOpenFileError	Exception type for errors while opening a file
CEggRuntimeError	Exception type for runtime errors
CEggUnalignedError	Exception type for unaligned sequences
CFasta	Fasta parser/formatter
CFStatistics	Computes Fis, Fst and Fit from diploid data
CHFStatistics	Computes Fst and Fit from haploid data
CMicrosatelliteDiversity	Analyzes microsatellite data
CMs	Ms-like sequence format parser
CMutation	Very simple container of some information relative to a mutation
CMutator	Implements mutation models
CParamSet	Set of parameters
CPopulation	Handles a single population
CRandom	Pseudo-random number generator
CSitePolymorphism	Implements diversity analysis at the site level
CStaden	Parser of Staden output format