HaplotypeDiversity Member List

This is the complete list of members for HaplotypeDiversity, including all inherited members.

aaMapping	BaseDiversity	static
analyzeSite(CharMatrix &data, unsigned int index, double maxMissingData, bool ignoreOutgroup) (defined in BaseDiversity)	BaseDiversity	protected
BaseDiversity()	BaseDiversity
clear() (defined in HaplotypeDiversity)	HaplotypeDiversity	protectedvirtual
diff(CharMatrix &data, unsigned int ind1, unsigned int ind2) const (defined in HaplotypeDiversity)	HaplotypeDiversity	inlineprotected
dnaMapping	BaseDiversity	static
Fst() const	HaplotypeDiversity
get_position(unsigned int index) const	BaseDiversity
get_site(unsigned int index) const	BaseDiversity
getPopIndex(unsigned int label) const (defined in BaseDiversity)	BaseDiversity	protected
Gst() const	HaplotypeDiversity
HaplotypeDiversity()	HaplotypeDiversity
haplotypeIndex(unsigned int) const	HaplotypeDiversity
He() const	HaplotypeDiversity
Hst() const	HaplotypeDiversity
importSites(CharMatrix &data, bool allowMultipleMutations, double minimumExploitableData, unsigned int ignoreFrequency, std::string characterMapping, bool useZeroAsAncestral, bool ignoreOutgroup) (defined in BaseDiversity)	BaseDiversity	protected
init() (defined in HaplotypeDiversity)	HaplotypeDiversity	protectedvirtual
K() const	HaplotypeDiversity
Kst() const	HaplotypeDiversity
load(CharMatrix &data, bool allowMultipleMutations=false, unsigned int ignoreFrequency=0, std::string characterMapping=dnaMapping)	HaplotypeDiversity
m_Fst (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_Gst (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_haplotypeIndex (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_He (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_Hst (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_K (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_Kst (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_loaded (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
m_Snn (defined in HaplotypeDiversity)	HaplotypeDiversity	protected
p_allowMultipleMutations (defined in BaseDiversity)	BaseDiversity	protected
p_characterMapping (defined in BaseDiversity)	BaseDiversity	protected
p_ignoreFrequency (defined in BaseDiversity)	BaseDiversity	protected
p_minimumExploitableData (defined in BaseDiversity)	BaseDiversity	protected
p_pos_sep_mapping (defined in BaseDiversity)	BaseDiversity	protected
p_useZeroAsAncestral (defined in BaseDiversity)	BaseDiversity	protected
reserve(unsigned int numberOfSites)	BaseDiversity	virtual
reset()	BaseDiversity	virtual
rnaMapping	BaseDiversity	static
Snn() const	HaplotypeDiversity
v_eta (defined in BaseDiversity)	BaseDiversity	protected
v_lseff (defined in BaseDiversity)	BaseDiversity	protected
v_lseffo (defined in BaseDiversity)	BaseDiversity	protected
v_npop (defined in BaseDiversity)	BaseDiversity	protected
v_ns (defined in BaseDiversity)	BaseDiversity	protected
v_nseff (defined in BaseDiversity)	BaseDiversity	protected
v_nseffo (defined in BaseDiversity)	BaseDiversity	protected
v_orientables (defined in BaseDiversity)	BaseDiversity	protected
v_popLabel (defined in BaseDiversity)	BaseDiversity	protected
v_reserved (defined in BaseDiversity)	BaseDiversity	protected
v_S (defined in BaseDiversity)	BaseDiversity	protected
v_sitePositions (defined in BaseDiversity)	BaseDiversity	protected
v_sites (defined in BaseDiversity)	BaseDiversity	protected
v_So (defined in BaseDiversity)	BaseDiversity	protected
~BaseDiversity()	BaseDiversity	virtual
~HaplotypeDiversity()	HaplotypeDiversity	virtual