BaseDiversity Member List

This is the complete list of members for BaseDiversity, including all inherited members.

aaMapping	BaseDiversity	static
analyzeSite(CharMatrix &data, unsigned int index, double maxMissingData, bool ignoreOutgroup) (defined in BaseDiversity)	BaseDiversity	protected
BaseDiversity()	BaseDiversity
clear() (defined in BaseDiversity)	BaseDiversity	protectedvirtual
dnaMapping	BaseDiversity	static
get_position(unsigned int index) const	BaseDiversity
get_site(unsigned int index) const	BaseDiversity
getPopIndex(unsigned int label) const (defined in BaseDiversity)	BaseDiversity	protected
importSites(CharMatrix &data, bool allowMultipleMutations, double minimumExploitableData, unsigned int ignoreFrequency, std::string characterMapping, bool useZeroAsAncestral, bool ignoreOutgroup) (defined in BaseDiversity)	BaseDiversity	protected
init() (defined in BaseDiversity)	BaseDiversity	protectedvirtual
p_allowMultipleMutations (defined in BaseDiversity)	BaseDiversity	protected
p_characterMapping (defined in BaseDiversity)	BaseDiversity	protected
p_ignoreFrequency (defined in BaseDiversity)	BaseDiversity	protected
p_minimumExploitableData (defined in BaseDiversity)	BaseDiversity	protected
p_pos_sep_mapping (defined in BaseDiversity)	BaseDiversity	protected
p_useZeroAsAncestral (defined in BaseDiversity)	BaseDiversity	protected
reserve(unsigned int numberOfSites)	BaseDiversity	virtual
reset()	BaseDiversity	virtual
rnaMapping	BaseDiversity	static
v_eta (defined in BaseDiversity)	BaseDiversity	protected
v_lseff (defined in BaseDiversity)	BaseDiversity	protected
v_lseffo (defined in BaseDiversity)	BaseDiversity	protected
v_npop (defined in BaseDiversity)	BaseDiversity	protected
v_ns (defined in BaseDiversity)	BaseDiversity	protected
v_nseff (defined in BaseDiversity)	BaseDiversity	protected
v_nseffo (defined in BaseDiversity)	BaseDiversity	protected
v_orientables (defined in BaseDiversity)	BaseDiversity	protected
v_popLabel (defined in BaseDiversity)	BaseDiversity	protected
v_reserved (defined in BaseDiversity)	BaseDiversity	protected
v_S (defined in BaseDiversity)	BaseDiversity	protected
v_sitePositions (defined in BaseDiversity)	BaseDiversity	protected
v_sites (defined in BaseDiversity)	BaseDiversity	protected
v_So (defined in BaseDiversity)	BaseDiversity	protected
~BaseDiversity()	BaseDiversity	virtual