Align Member List

This is the complete list of members for Align, including all inherited members.

_ls (defined in Align)	Align	protected
_ns (defined in Container)	Container	protected
Align()	Align
Align(unsigned int number_of_sequences, unsigned int alignment_length, char const *const *const cstring_array)	Align
Align(unsigned int number_of_sequences, unsigned int alignment_length)	Align
Align(const Align &align)	Align
Align(const Container &container)	Align
append(const char *name, const char *sequence, unsigned int group=0)	Align	virtual
appendSequence(unsigned int pos, const char *sequence)	Align	inlineprotectedvirtual
binSwitch(unsigned int pos)	Align
character(unsigned int s, unsigned int p) const	Align	inlinevirtual
clear()	Align	virtual
Container()	Container
Container(const Container &source)	Container
Container(unsigned int number_of_sequences, char const *const *const cstring_array)	Container
copyObject(const Container &) (defined in Align)	Align	protectedvirtual
copyObject(const Align &) (defined in Align)	Align	protectedvirtual
equalize(char ch='?')	Container
find(const char *string, bool strict=true) const	Container
get(unsigned int sequence, unsigned int position) const	Align	virtual
getNamesAndGroups(const Container &) (defined in Container)	Container	protectedvirtual
group(unsigned int pos, unsigned int group)	Container	virtual
group(unsigned int pos) const	Container	virtual
groups (defined in Container)	Container	protected
hslice(unsigned int a, unsigned int b) const	Container
init() (defined in Align)	Align	protectedvirtual
isEqual() const	Container
lnames (defined in Container)	Container	protected
ls() const	Align	virtual
ls(unsigned int pos) const	Align	virtual
name(unsigned int pos, const char *name)	Container	virtual
name(unsigned int pos) const	Container	virtual
names (defined in Container)	Container	protected
ns() const	Container
numberOfSequences() const	Align	inlinevirtual
numberOfSites() const	Align	inlinevirtual
operator=(const Align &align)	Align
operator=(const Container &container)	Align
populationLabel(unsigned int sequenceIndex) const	Align	inlinevirtual
remove(unsigned int pos)	Align	virtual
removePosition(unsigned int pos)	Align	virtual
sequence(unsigned int seq, const char *sequence)	Align	virtual
sequence(unsigned int pos) const	Align	inlinevirtual
sequences (defined in Container)	Container	protected
set(unsigned int sequence, unsigned position, char ch)	Align	virtual
setFromSource(unsigned int number_of_sequences, unsigned int alignment_length, const char *const *const cstring_array) (defined in Align)	Align	protectedvirtual
setFromSource(unsigned int number_of_sequences, const char *const *const cstring_array) (defined in Container)	Container	protectedvirtual
sitePosition(unsigned int position) const	Align	inlinevirtual
vslice(std::vector< unsigned int > list_of_sites)	Align
vslice(unsigned int a, unsigned int b)	Align
~Align()	Align	virtual
~Container()	Container	virtual